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In this tutorial, FABIAN-variant is used to analyze variants from a whole genome sequencing (WGS) run using transcription factor flexible models (TFFMs).
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26.05.2022 · FABIAN-variant is available freely at https://www.genecascade.org/fabian/. ... The results page for each analysis has a unique URL ... Q. ,. Collins.
FABIAN is a web-based application that uses TFFMs and PWMs to predict the degree to which DNA variants are likely to disrupt (or create) the binding sites of ...
05.07.2022 · The search can be restricted to variants in the vicinity of candidate genes. FABIAN-variant is available freely at https://www.genecascade.org/ ...
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09.06.2022 · However, the interaction between this SNP and our candidate gene PTBP2 was not significant (p value = 0.85) and FABIAN did not imply an effect ...
Direct comparison of binding models generated by different methods. Depicted are AUC scores for TFs stored in both JASPAR (manually collected curated ...
30.12.2023 · https://www.genecascade.org/fabian/, 35639768 ... Koboldt DC, Zhang Q, Larson DE, Shen D ... Link current as of Oct 2023: NA is not applicable.
01.07.2022 · This is the 20th edition of the Nucleic Acids Research Web Server Issue. Under normal circumstances, this would be an opportunity to ...